Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
viuB_1Siderophore-interacting FAD-binding domain protein. (278 aa)    
Predicted Functional Partners:
hemS
Hemin transport protein hemS.
 
    0.600
ydhP_1
Sugar (and other) transporter family protein.
 
     0.542
hemS-2
Hemin transport protein hemS.
 
    0.534
apxIB_1
type_I_sec_HlyB: type I secretion system ATPase family protein.
   
   0.487
apxIB_2
type_I_sec_HlyB: type I secretion system ATPase family protein.
   
   0.487
lagD
ABC transporter family protein.
   
   0.487
fecB3
Periplasmic binding family protein.
 
  
 0.473
trpE
trpE_proteo: anthranilate synthase component I.
  
  
 0.473
pabB
pabB: aminodeoxychorismate synthase, component I.
  
  
 0.473
ripA_1
Helix-turn-helix domain protein.
  
    0.446
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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