STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
narXNitrate/nitrite sensor protein narX. (593 aa)    
Predicted Functional Partners:
narP
Bacterial regulatory s, luxR family protein.
 
 0.987
narL
Bacterial regulatory s, luxR family protein.
 
 
 0.906
uhpA_1
Bacterial regulatory s, luxR family protein.
 
 
 0.799
uhpA
Transcriptional regulatory protein uhpA.
 
 
 0.784
nreC
Bacterial regulatory s, luxR family protein.
 
 
 0.780
bvgA
Virulence factors putative positive transcription regulator BvgA.
 
 
 0.683
bvgA_2
Bacterial regulatory s, luxR family protein.
 
 
 0.661
uvrY
Response regulator.
 
 
 0.650
rcsB
rcsB protein; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsB is the response regulator that binds to regulatory DNA regions.
 
 
 0.648
CH53_3728
Hypothetical protein.
       0.581
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.