Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
narXNitrate/nitrite sensor protein narX. (593 aa)    
Predicted Functional Partners:
narP
Bacterial regulatory s, luxR family protein.
 
 0.992
narL
Bacterial regulatory s, luxR family protein.
 
 
 0.929
uhpA_1
Bacterial regulatory s, luxR family protein.
 
 
 0.789
nreC
Bacterial regulatory s, luxR family protein.
 
 
 0.779
uhpA
Transcriptional regulatory protein uhpA.
 
 
 0.774
bvgA
Virulence factors putative positive transcription regulator BvgA.
 
 
 0.668
bvgA_2
Bacterial regulatory s, luxR family protein.
 
 
 0.645
uvrY
Response regulator.
 
 
 0.634
rcsB
rcsB protein; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsB is the response regulator that binds to regulatory DNA regions.
 
 
 0.631
narI
narI: respiratory nitrate reductase, gamma subunit.
 
  
 0.610
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.