STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
appCBacterial Cytochrome Ubiquinol Oxidase family protein. (476 aa)    
Predicted Functional Partners:
cydB-2
cydB: cytochrome d ubiquinol oxidase, subunit II.
 0.999
cydB
cydB: cytochrome d ubiquinol oxidase, subunit II.
 0.998
ybgT
cyd_oper_ybgT: cyd operon protein YbgT.
  
 0.978
cydA
Cytochrome d ubiquinol oxidase subunit 1.
  
  
 
0.918
cydD
cydD: thiol reductant ABC exporter, CydD subunit.
 
  
 0.849
CH53_3728
Hypothetical protein.
  
    0.843
cydC
cydC: thiol reductant ABC exporter, CydC subunit.
 
  
 0.749
CH53_3150
cyd_oper_ybgE: cyd operon protein YbgE.
  
    0.664
cyoD
cyoD: cytochrome o ubiquinol oxidase subunit IV.
     
 0.602
putA
Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family.
   
 
 0.577
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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