Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
hutGhutG_amidohyd: N-formylglutamate deformylase. (269 aa)    
Predicted Functional Partners:
hutF
hutF: formiminoglutamate deiminase.
 
 
 0.990
hutI
hutI: imidazolonepropionase.
 
  
 0.978
purU
Formyltetrahydrofolate deformylase; Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4).
   
 
  0.902
fdoI
formate-DH-gamm: formate dehydrogenase, gamma subunit.
     
  0.900
fdxH
Formate dehydrogenase, beta subunit; The beta chain is an electron transfer unit containing 4 cysteine clusters involved in the formation of iron-sulfur centers.
     
  0.900
fdnG
formate-DH-alph: formate dehydrogenase-N alpha subunit.
     
  0.900
CH53_1681
Molybdopterin oxidoreductase Fe4S4 domain protein.
     
  0.900
hutC
His_ut_repres: histidine utilization repressor.
 
  
 0.852
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
 
  
 0.834
gltB
Glutamine amidotransferases class-II family protein.
     
 0.815
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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