STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
hutCHis_ut_repres: histidine utilization repressor. (255 aa)    
Predicted Functional Partners:
hutI
hutI: imidazolonepropionase.
 
  
 0.926
hutF
hutF: formiminoglutamate deiminase.
 
  
 0.880
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
 
  
 0.857
hutG
hutG_amidohyd: N-formylglutamate deformylase.
 
  
 0.852
hutH
hutH: histidine ammonia-lyase.
 
  
 0.848
nadR
Trifunctional NAD biosynthesis/regulator protein NadR.
   
  
 0.717
ves
hutD family protein.
 
     0.715
rhaR
HTH-type transcriptional activator rhaR; Activates expression of the rhaSR operon in response to L- rhamnose.
  
  
 0.485
rhaS_1
Helix-turn-helix domain protein; Activates expression of the rhaBAD and rhaT operons.
  
  
 0.485
mngR
UTRA domain protein.
  
   
 0.475
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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