mglB_1 protein (Yersinia intermedia) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

mglB_1

Periplasmic binding domain protein. (307 aa)

Predicted Functional Partners:

ccmA-11

0.982

rbsC1

0.982

rbsC_8

0.856

rbsC_2

0.837

rbsC_1

0.831

lsrD_1

0.830

rbsC_4

0.827

alsC_3

0.826

rbsC_7

0.822

rbsC_6

0.819

Your Current Organism:

Yersinia intermedia

NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
alsC_3	ccmA-11	CH53_3038	CH53_3745	Branched-chain amino acid transport system / permease component family protein; Belongs to the binding-protein-dependent transport system permease family.	Heme ABC exporter, ATP-binding protein CcmA; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.	0.786
alsC_3	mglB_1	CH53_3038	CH53_3744	Branched-chain amino acid transport system / permease component family protein; Belongs to the binding-protein-dependent transport system permease family.	Periplasmic binding domain protein.	0.826
ccmA-11	alsC_3	CH53_3745	CH53_3038	Heme ABC exporter, ATP-binding protein CcmA; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.	Branched-chain amino acid transport system / permease component family protein; Belongs to the binding-protein-dependent transport system permease family.	0.786
ccmA-11	lsrD_1	CH53_3745	CH53_3343	Heme ABC exporter, ATP-binding protein CcmA; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.	Branched-chain amino acid transport system / permease component family protein; Belongs to the binding-protein-dependent transport system permease family.	0.776
ccmA-11	mglB_1	CH53_3745	CH53_3744	Heme ABC exporter, ATP-binding protein CcmA; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.	Periplasmic binding domain protein.	0.982
ccmA-11	rbsC1	CH53_3745	CH53_3746	Heme ABC exporter, ATP-binding protein CcmA; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.	Branched-chain amino acid transport system / permease component family protein; Belongs to the binding-protein-dependent transport system permease family.	0.991
ccmA-11	rbsC_1	CH53_3745	CH53_852	Heme ABC exporter, ATP-binding protein CcmA; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.	Branched-chain amino acid transport system / permease component family protein; Belongs to the binding-protein-dependent transport system permease family.	0.804
ccmA-11	rbsC_2	CH53_3745	CH53_831	Heme ABC exporter, ATP-binding protein CcmA; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.	Branched-chain amino acid transport system / permease component family protein; Belongs to the binding-protein-dependent transport system permease family.	0.853
ccmA-11	rbsC_4	CH53_3745	CH53_3344	Heme ABC exporter, ATP-binding protein CcmA; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.	Branched-chain amino acid transport system / permease component family protein; Belongs to the binding-protein-dependent transport system permease family.	0.788
ccmA-11	rbsC_6	CH53_3745	CH53_2179	Heme ABC exporter, ATP-binding protein CcmA; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.	Branched-chain amino acid transport system / permease component family protein; Belongs to the binding-protein-dependent transport system permease family.	0.773
ccmA-11	rbsC_7	CH53_3745	CH53_2180	Heme ABC exporter, ATP-binding protein CcmA; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.	Branched-chain amino acid transport system / permease component family protein; Belongs to the binding-protein-dependent transport system permease family.	0.756
ccmA-11	rbsC_8	CH53_3745	CH53_1788	Heme ABC exporter, ATP-binding protein CcmA; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.	Branched-chain amino acid transport system / permease component family protein; Belongs to the binding-protein-dependent transport system permease family.	0.841
lsrD_1	ccmA-11	CH53_3343	CH53_3745	Branched-chain amino acid transport system / permease component family protein; Belongs to the binding-protein-dependent transport system permease family.	Heme ABC exporter, ATP-binding protein CcmA; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.	0.776
lsrD_1	mglB_1	CH53_3343	CH53_3744	Branched-chain amino acid transport system / permease component family protein; Belongs to the binding-protein-dependent transport system permease family.	Periplasmic binding domain protein.	0.830
lsrD_1	rbsC_4	CH53_3343	CH53_3344	Branched-chain amino acid transport system / permease component family protein; Belongs to the binding-protein-dependent transport system permease family.	Branched-chain amino acid transport system / permease component family protein; Belongs to the binding-protein-dependent transport system permease family.	0.841
mglB_1	alsC_3	CH53_3744	CH53_3038	Periplasmic binding domain protein.	Branched-chain amino acid transport system / permease component family protein; Belongs to the binding-protein-dependent transport system permease family.	0.826
mglB_1	ccmA-11	CH53_3744	CH53_3745	Periplasmic binding domain protein.	Heme ABC exporter, ATP-binding protein CcmA; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.	0.982
mglB_1	lsrD_1	CH53_3744	CH53_3343	Periplasmic binding domain protein.	Branched-chain amino acid transport system / permease component family protein; Belongs to the binding-protein-dependent transport system permease family.	0.830
mglB_1	rbsC1	CH53_3744	CH53_3746	Periplasmic binding domain protein.	Branched-chain amino acid transport system / permease component family protein; Belongs to the binding-protein-dependent transport system permease family.	0.982
mglB_1	rbsC_1	CH53_3744	CH53_852	Periplasmic binding domain protein.	Branched-chain amino acid transport system / permease component family protein; Belongs to the binding-protein-dependent transport system permease family.	0.831

page 1 of 3

Server load: low (18%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2025

Credits

Access

Info

About