STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yceBHypothetical protein. (187 aa)    
Predicted Functional Partners:
yfeE
yniB-like family protein.
  
     0.773
CH53_2581
Hypothetical protein.
  
     0.770
ycdY
Nitrate reductase delta subunit.
  
     0.767
CH53_2026
Hypothetical protein.
  
     0.766
yfeY
Hypothetical protein.
  
     0.759
CH53_3126
Hypothetical protein.
  
     0.753
CH53_989
Hypothetical protein; Belongs to the UPF0231 family.
  
     0.749
CH53_2858
Hypothetical protein.
  
     0.737
CH53_4348
Hypothetical protein; Belongs to the UPF0181 family.
  
     0.735
wecF
4-alpha-L-fucosyltransferase glycosyl transferase group 56 family protein; Catalyzes the synthesis of Und-PP-GlcNAc-ManNAcA-Fuc4NAc (Lipid III), the third lipid-linked intermediate involved in ECA synthesis; Belongs to the glycosyltransferase 56 family.
  
     0.732
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.