STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
shlB-2Hemolysin transporter protein shlB. (522 aa)    
Predicted Functional Partners:
shlB
Hemolysin transporter protein shlB.
  
  
 
0.908
CH53_3832
Hypothetical protein; adhes_NPXG: filamentous hemagglutinin family N-terminal domain protein.
 
 
 0.902
CH53_1183
Hypothetical protein; adhes_NPXG: filamentous hemagglutinin family N-terminal domain protein.
 
 
 0.788
fhaB
Hypothetical protein; adhes_NPXG: filamentous hemagglutinin family N-terminal domain protein.
 
 
 0.775
prcA
Proconvertase P-domain protein.
 
  
 0.608
prtA-2
Secreted protease A.
  
    0.588
prtA-3
Secreted protease A.
  
    0.576
CH53_3833
Hemagluttinin repeat family protein.
  
 
 0.556
CH53_3174
CAAX protease self-immunity family protein.
  
     0.519
rcsA_2
Bacterial regulatory s, luxR family protein.
  
    0.518
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.