STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dosPGGDEF: diguanylate cyclase domain protein. (865 aa)    
Predicted Functional Partners:
arcB
Sensory box protein.
 
 
 0.967
barA_2
Sensory box protein.
 
 0.967
adrA_2
GGDEF: diguanylate cyclase domain protein.
 
 
0.961
cph2_2
GGDEF: diguanylate cyclase domain protein.
 
0.912
pleD_1
GGDEF: diguanylate cyclase domain protein.
 
0.892
gmr_2
GGDEF: diguanylate cyclase domain protein.
 
 
 
0.883
bvgS_2
His Kinase A domain protein.
 
 0.870
gmr_3
GGDEF: diguanylate cyclase domain protein.
 
 
 
0.864
csrD
RNase E specificity factor CsrD.
 
 
0.848
barA_1
HAMP domain protein.
 
 
 0.846
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.