STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yfbTHAD-SF-IA-v1: HAD hydrolase, IA, variant 1 family protein. (218 aa)    
Predicted Functional Partners:
yniC
Phosphatase YniC.
  
  
0.928
mtlA
PTS system mannitol-specific EIICBA component.
  
 
  0.906
mtlD
Mannitol-1-phosphate 5-dehydrogenase.
    
 0.902
fruB
Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 family protein.
    
  0.902
CH53_3316
HAD-SF-IA-v1: HAD hydrolase, IA, variant 1 family protein.
  
     0.719
yfbU
Hypothetical protein; Belongs to the UPF0304 family.
 
    0.702
xapB
Xanthosine permease.
 
  
 0.477
CH53_387
Citrate transporter family protein.
       0.448
yfbV
Hypothetical protein.
       0.411
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.