STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
hlyDtype_I_hlyD: type I secretion membrane fusion, HlyD family protein. (464 aa)    
Predicted Functional Partners:
apxIB_1
type_I_sec_HlyB: type I secretion system ATPase family protein.
 
 
 0.982
apxIB_2
type_I_sec_HlyB: type I secretion system ATPase family protein.
 
 
 0.981
ompC
Outer membrane protein C; Belongs to the Gram-negative porin family.
      
 0.780
CH53_2992
GDSL-like Lipase/Acylhydrolase family protein.
  
   
 0.739
prtA
Secreted protease A.
 
  
 0.726
prsD
type_I_sec_PrtD: type I secretion system ATPase family protein.
 
  
 0.716
hasD
type_I_sec_PrtD: type I secretion system ATPase family protein.
 
  
 0.702
lagD
ABC transporter family protein.
  
 
 0.689
sugE
Quaternary ammonium compound-resistance protein sugE.
   
  
 0.628
tolC_2
type_I_sec_TolC: type I secretion outer membrane, TolC family protein.
 
 
 0.617
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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