STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
araCHelix-turn-helix domain protein. (310 aa)    
Predicted Functional Partners:
araF
Periplasmic binding domain protein.
 
   
 0.756
invG
type_III_yscC: type III secretion outer membrane pore, YscC/HrcC family.
   
  
 0.647
prgK
III_secr_YscJ: type III secretion apparatus lipoprotein, YscJ/HrcJ family.
   
  
 0.642
rhaS_2
Helix-turn-helix domain protein.
  
   
 0.595
rbsC_5
Branched-chain amino acid transport system / permease component family protein; Belongs to the binding-protein-dependent transport system permease family.
 
   
 0.559
ydgJ
Putative oxidoreductase.
  
    0.552
araB
L-ribulokinase: ribulokinase.
  
   
 0.531
rhaS_1
Helix-turn-helix domain protein; Activates expression of the rhaBAD and rhaT operons.
  
   0.510
melR
Melibiose operon regulatory protein.
  
   
 0.498
araG_2
ABC transporter family protein; Part of the ABC transporter complex AraFGH involved in arabinose import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Arabinose importer (TC 3.A.1.2.2) family.
       0.451
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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