Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-expression
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[Homology]
Score
ulaBPTS system, Lactose/Cellobiose specific IIB subunit. (95 aa)    
Predicted Functional Partners:
ulaA
PTS system sugar-specific permease component family protein.
 
 
 0.998
ptsN1
Phosphotransferase enzyme II, A component.
 
 
 0.994
ptsH
Phosphocarrier protein HPr.
    
 0.906
nfuA
fe/S biogenesis protein nfuA; Involved in iron-sulfur cluster biogenesis. Binds a 4Fe-4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe/S proteins. Could also act as a scaffold/chaperone for damaged Fe/S proteins.
      
 0.697
phnP
phnP: phosphonate metabolism protein PhnP.
      
 0.685
fruA
FRU: PTS system, Fru family, IIB component domain protein.
  
   
 0.652
rpsF
Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
      
 0.627
fryA
PEP-utilizing enzyme, mobile domain protein.
  
  
 0.602
mtlA
PTS system mannitol-specific EIICBA component.
 
  
 0.515
licR
PRD domain protein.
 
  
 0.514
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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