STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rspAPutative mandelate racemase / muconate lactonizing enzyme. (399 aa)    
Predicted Functional Partners:
por
Mannitol dehydrogenase Rossmann domain protein.
 
  
 0.922
kduD
kduD: 2-deoxy-D-gluconate 3-dehydrogenase.
  
  
  0.917
uxuA
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
    
 0.915
uxaA_1
Hypothetical protein; D-galactarate dehydratase / Altronate hydrolase, C terminus family protein.
  
 
 0.910
kdgK
pfkB carbohydrate kinase family protein.
 
  
  0.837
CH53_1715
2-keto-3-deoxy-galactonokinase family protein.
 
 
 0.809
rpe
Rpe: ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
     
  0.800
rpiA
Ribose 5-phosphate isomerase A; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.
     
  0.800
rpiB
rpiB: ribose 5-phosphate isomerase B.
     
  0.800
gnd
6-phosphogluconate dehydrogenase; Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.
     
  0.800
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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