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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ulaAPTS system sugar-specific permease component family protein. (418 aa)    
Predicted Functional Partners:
ulaB
PTS system, Lactose/Cellobiose specific IIB subunit.
 
 
 0.998
ptsN1
Phosphotransferase enzyme II, A component.
 
 
 0.994
ptsH
Phosphocarrier protein HPr.
    
 0.903
rpmJ-2
rpmJ_bact: ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family.
   
    0.877
rpmE-2
L31: ribosomal protein L31.
   
    0.877
livK1
Periplasmic binding domain protein.
   
    0.877
ribE
ribE: riboflavin synthase, alpha subunit.
   
    0.877
CH53_2042
Hypothetical protein.
   
    0.876
potG
Polyamine ABC transporter, ATP-binding family protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
   
    0.820
CH53_1420
Hypothetical protein.
   
    0.766
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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