Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ulaAPTS system sugar-specific permease component family protein. (418 aa)    
Predicted Functional Partners:
ulaB
PTS system, Lactose/Cellobiose specific IIB subunit.
 
 
 0.998
ptsN1
Phosphotransferase enzyme II, A component.
 
 
 0.995
ptsH
Phosphocarrier protein HPr.
    
  0.902
dxs-2
Transketolase, C-terminal domain protein.
  
    0.747
fruA
FRU: PTS system, Fru family, IIB component domain protein.
  
  
 0.703
nfuA
fe/S biogenesis protein nfuA; Involved in iron-sulfur cluster biogenesis. Binds a 4Fe-4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe/S proteins. Could also act as a scaffold/chaperone for damaged Fe/S proteins.
      
 0.686
phnP
phnP: phosphonate metabolism protein PhnP.
      
 0.685
rpsF
Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
      
 0.630
ulaE_1
Xylose isomerase-like TIM barrel family protein.
 
   
 0.622
ulaE_2
Xylose isomerase-like TIM barrel family protein.
 
   
 0.621
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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