STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CH53_3973Bacterial regulatory s, luxR family protein. (238 aa)    
Predicted Functional Partners:
barA_2
Sensory box protein.
  
 
 0.763
barA_1
HAMP domain protein.
  
 
 0.758
evgS
Sensor protein evgS.
  
 
 0.756
bvgS_2
His Kinase A domain protein.
  
 
 0.756
bvgS_1
Hpt domain protein.
   
 
 0.747
adrA_2
GGDEF: diguanylate cyclase domain protein.
  
 
 0.704
rcsC_1
HAMP domain protein.
  
 
 0.669
rcsC_3
rcsC Alpha-Beta-Loop family protein; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsC functions as a membrane- associated protein kinase that phosphorylates RcsD in response to environmental signals. The phosphoryl group is then transferred to the response regulator RcsB.
  
 
 0.669
cheV
Response regulator.
  
 
 0.656
arcB
Sensory box protein.
   
 
 0.640
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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