STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
hisM_1HEQRo_perm_3TM: amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein. (240 aa)    
Predicted Functional Partners:
hisJ_1
Bacterial extracellular solute-binding s, 3 family protein.
 
 
  0.978
hisP
ABC transporter family protein.
 
 
 0.972
hisJ
Histidine-binding periplasmic protein; Belongs to the bacterial solute-binding protein 3 family.
 
 
  0.955
hisQ_1
HEQRo_perm_3TM: amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein.
 
 
0.918
hisM
Histidine transport system permease protein hisM.
  
  
 
0.911
artI3
3A0103s03R: lysine-arginine-ornithine-binding periplasmic family protein; Belongs to the bacterial solute-binding protein 3 family.
    0.788
artJ
ABC transporter arginine-binding protein 1; Belongs to the bacterial solute-binding protein 3 family.
    0.788
fliY_1
Bacterial extracellular solute-binding s, 3 family protein.
    0.781
artM_1
ABC transporter family protein.
 
    0.774
artM_2
ABC transporter family protein.
 
    0.772
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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