STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CH53_3996N(G),N(G)-dimethylarginine dimethylaminohydrolase. (252 aa)    
Predicted Functional Partners:
hisJ_1
Bacterial extracellular solute-binding s, 3 family protein.
 
     0.655
arcA
arcA: arginine deiminase.
 
   
 0.478
hisM_1
HEQRo_perm_3TM: amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein.
       0.453
CH53_400
rmlD substrate binding domain protein.
  
    0.452
hisQ_1
HEQRo_perm_3TM: amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein.
       0.449
chaA
Caca2: calcium/proton exchanger family protein.
   
    0.432
yhjD
Inner membrane protein YhjD.
   
    0.431
yihY
yihY_not_rbn: YihY family inner membrane domain protein.
   
    0.431
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
    
  0.428
arcC
arcC: carbamate kinase; Belongs to the carbamate kinase family.
 
   
 0.425
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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