STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CH53_4002Putative myosin light chain kinase, smooth muscle. (450 aa)    
Predicted Functional Partners:
CH53_4003
Virulence factor SrfB family protein.
  
 0.993
CH53_4004
Bacterial virulence factor family protein.
 
  
 0.964
mtlR
Mannitol operon repressor.
  
     0.660
ybjP
Putative lipoprotein YbjP.
  
     0.634
bcsE
cellulose_bcsE: cellulose biosynthesis protein BcsE.
  
     0.633
CH53_2813
Hypothetical protein.
  
     0.625
CH53_3211
Suppressor of fused family protein.
  
     0.622
yiaH
Inner membrane protein YiaH; Responsible for the incorporation of O-acetyl groups into the enterobacterial common antigen (ECA) trisaccharide repeat units.
  
     0.607
CH53_636
Alpha-2-macroglobulin family protein; Protects the bacterial cell from host peptidases.
 
  
 0.553
flgN
flgN family protein.
  
     0.547
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.