STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CH53_4036Hypothetical protein. (109 aa)    
Predicted Functional Partners:
higA-2
Helix-turn-helix family protein.
 
 
 0.976
CH53_1883
Helix-turn-helix family protein.
 
     0.731
uptG
CBS domain protein.
  
 
 0.639
CH53_3085
Hypothetical protein.
  
   
 0.527
higA
antidote_HigA: addiction module antidote protein, HigA family.
 
     0.449
CH53_3084
Helix-turn-helix family protein.
  
     0.432
CH53_2229
Plasmid maintenance system killer family protein.
  
     0.413
CH53_3635
Bacterial regulatory s, gntR family protein.
  
     0.404
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.