STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hisJHistidine-binding periplasmic protein; Belongs to the bacterial solute-binding protein 3 family. (260 aa)    
Predicted Functional Partners:
hisM
Histidine transport system permease protein hisM.
 
 
 0.990
hisQ_2
HEQRo_perm_3TM: amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein.
 0.990
hisP
ABC transporter family protein.
 
 
 0.988
hisM_1
HEQRo_perm_3TM: amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein.
 
 
 0.954
hisJ_1
Bacterial extracellular solute-binding s, 3 family protein.
  
  
 
0.906
yecS
Inner membrane amino-acid ABC transporter permease protein yecS.
 
 0.896
mglB
D-galactose-binding periplasmic protein.
   
  
 0.879
fadD
AMP-binding enzyme family protein.
   
    0.877
dadA
Ketopantoate reductase PanE/ApbA family protein; Oxidative deamination of D-amino acids.
   
    0.877
glnP
HEQRo_perm_3TM: amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein.
 
 0.838
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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