STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sapB_1mgtC family protein. (219 aa)    
Predicted Functional Partners:
hdeD
Protein hdeD.
  
  
 0.842
gadC
Amino acid permease family protein.
   
    0.639
gadA
glu-decarb-GAD: glutamate decarboxylase; Belongs to the group II decarboxylase family.
   
  
 0.512
mgtA
ATPase-IIIB_Mg: magnesium-translocating P-type ATPase.
 
 
 0.507
mgtA-2
ATPase-IIIB_Mg: magnesium-translocating P-type ATPase.
 
 
 0.507
ctpF
ATPase_P-type: HAD ATPase, P-type, IC family protein.
 
 
 0.485
hdeB_1
hdeA/HdeB family protein; Required for optimal acid stress protection, which is important for survival of enteric bacteria in the acidic environment of the host stomach. Exhibits a chaperone-like activity at acidic pH by preventing the aggregation of many different periplasmic proteins. Belongs to the HdeB family.
   
  
 0.464
hdeB
hdeB domain protein; Required for optimal acid stress protection, which is important for survival of enteric bacteria in the acidic environment of the host stomach. Exhibits a chaperone-like activity at acidic pH by preventing the aggregation of many different periplasmic proteins. Belongs to the HdeB family.
   
  
 0.464
CH53_4043
Hypothetical protein.
       0.445
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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