STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ycjXHypothetical protein. (465 aa)    
Predicted Functional Partners:
ycjF
Hypothetical protein.
 
  
 0.995
CH53_4058
Phage shock PspD family protein.
     
 0.875
pspC
phageshock_pspC: phage shock protein C.
     
 0.668
mepA
Penicillin-insensitive murein endopeptidase family protein; Murein endopeptidase that cleaves the D-alanyl-meso-2,6- diamino-pimelyl amide bond that connects peptidoglycan strands. Likely plays a role in the removal of murein from the sacculus.
  
     0.656
pspB
phageshock_pspB: phage shock protein B.
     
 0.636
pspA
phageshock_pspA: phage shock protein A.
     
 0.505
CH53_989
Hypothetical protein; Belongs to the UPF0231 family.
  
     0.468
CH53_2785
L,D-transpeptidase catalytic domain protein.
  
     0.462
tyrR
Transcriptional regulatory protein tyrR.
  
  
 0.444
CH53_136
Hypothetical protein.
  
     0.438
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.