Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pspBphageshock_pspB: phage shock protein B. (75 aa)    
Predicted Functional Partners:
pspC
phageshock_pspC: phage shock protein C.
 
 
 0.999
pspA
phageshock_pspA: phage shock protein A.
 
 
 0.999
CH53_4058
Phage shock PspD family protein.
  
  
 0.979
barA_2
Sensory box protein.
    
 
 0.895
arcB
Sensory box protein.
  
 
 
 0.806
evgS
Sensor protein evgS.
    
 
 0.749
bvgS_2
His Kinase A domain protein.
    
 
 0.749
barA_1
HAMP domain protein.
    
 
 0.749
adrA_2
GGDEF: diguanylate cyclase domain protein.
    
 
 0.734
pspF
phageshock_pspF: psp operon transcriptional activator.
 
   
 0.712
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.