STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pspAphageshock_pspA: phage shock protein A. (221 aa)    
Predicted Functional Partners:
pspC
phageshock_pspC: phage shock protein C.
 
 
 0.999
pspB
phageshock_pspB: phage shock protein B.
 
 
 0.999
pspF
phageshock_pspF: psp operon transcriptional activator.
 
 
 
 0.982
CH53_4058
Phage shock PspD family protein.
  
  
 0.915
barA_2
Sensory box protein.
    
 
 0.899
arcB
Sensory box protein.
    
 
 0.776
evgS
Sensor protein evgS.
    
 
 0.760
bvgS_2
His Kinase A domain protein.
    
 
 0.760
barA_1
HAMP domain protein.
    
 
 0.751
adrA_2
GGDEF: diguanylate cyclase domain protein.
    
 
 0.746
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.