STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dppA_3Bacterial extracellular solute-binding s, 5 Middle family protein. (550 aa)    
Predicted Functional Partners:
sapB
Peptide transport system permease protein sapB.
  
 0.996
sapC
Peptide transport system permease protein sapC.
 
 
 0.996
sapD
Hypothetical protein; oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding, C-terminal domain protein; Belongs to the ABC transporter superfamily.
 
 
 0.994
sapF
Peptide transport system ATP-binding protein SapF.
 
  
  0.987
dppB_2
Binding--dependent transport system inner membrane component family protein.
 
 0.850
dppC
Binding--dependent transport system inner membrane component family protein.
 
 0.843
ddpB
Binding--dependent transport system inner membrane component family protein.
 
 0.831
dppB_1
Binding--dependent transport system inner membrane component family protein.
 
 0.830
ddpC_2
Binding--dependent transport system inner membrane component family protein.
 
 0.783
nifJ
Pyruvate:ferredoxin (flavodoxin) oxidoreductase; pyruv_ox_red: pyruvate:ferredoxin (flavodoxin) oxidoreductase.
  
  
 0.778
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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