Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CH53_2345 | rsd | CH53_2345 | CH53_2103 | Hypothetical protein. | Regulator of sigma D; Binds RpoD and negatively regulates RpoD-mediated transcription activation by preventing the interaction between the primary sigma factor RpoD with the catalytic core of the RNA polymerase and with promoter DNA. May be involved in replacement of the RNA polymerase sigma subunit from RpoD to RpoS during the transition from exponential growth to the stationary phase. | 0.699 |
| CH53_2345 | yohC | CH53_2345 | CH53_4075 | Hypothetical protein. | Inner membrane protein yohC. | 0.548 |
| CH53_3837 | yohC | CH53_3837 | CH53_4075 | spoVR like family protein. | Inner membrane protein yohC. | 0.620 |
| CH53_4074 | yohC | CH53_4074 | CH53_4075 | Glyoxalase-like domain protein. | Inner membrane protein yohC. | 0.475 |
| CH53_4076 | yohC | CH53_4076 | CH53_4075 | Hypothetical protein. | Inner membrane protein yohC. | 0.444 |
| fabG9 | yohC | CH53_3905 | CH53_4075 | Polysaccharide biosynthesis family protein. | Inner membrane protein yohC. | 0.427 |
| ligB | yohC | CH53_1829 | CH53_4075 | NAD-dependent DNA ligase adenylation domain protein; Catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. Belongs to the NAD-dependent DNA ligase family. LigB subfamily. | Inner membrane protein yohC. | 0.453 |
| rsd | CH53_2345 | CH53_2103 | CH53_2345 | Regulator of sigma D; Binds RpoD and negatively regulates RpoD-mediated transcription activation by preventing the interaction between the primary sigma factor RpoD with the catalytic core of the RNA polymerase and with promoter DNA. May be involved in replacement of the RNA polymerase sigma subunit from RpoD to RpoS during the transition from exponential growth to the stationary phase. | Hypothetical protein. | 0.699 |
| rsd | yohC | CH53_2103 | CH53_4075 | Regulator of sigma D; Binds RpoD and negatively regulates RpoD-mediated transcription activation by preventing the interaction between the primary sigma factor RpoD with the catalytic core of the RNA polymerase and with promoter DNA. May be involved in replacement of the RNA polymerase sigma subunit from RpoD to RpoS during the transition from exponential growth to the stationary phase. | Inner membrane protein yohC. | 0.755 |
| sdhC | yohC | CH53_3138 | CH53_4075 | succ_dehyd_cytB: succinate dehydrogenase, cytochrome b556 subunit. | Inner membrane protein yohC. | 0.459 |
| sdhC | yqcC | CH53_3138 | CH53_2713 | succ_dehyd_cytB: succinate dehydrogenase, cytochrome b556 subunit. | tRNA pseudouridine synthase C family protein. | 0.692 |
| yohC | CH53_2345 | CH53_4075 | CH53_2345 | Inner membrane protein yohC. | Hypothetical protein. | 0.548 |
| yohC | CH53_3837 | CH53_4075 | CH53_3837 | Inner membrane protein yohC. | spoVR like family protein. | 0.620 |
| yohC | CH53_4074 | CH53_4075 | CH53_4074 | Inner membrane protein yohC. | Glyoxalase-like domain protein. | 0.475 |
| yohC | CH53_4076 | CH53_4075 | CH53_4076 | Inner membrane protein yohC. | Hypothetical protein. | 0.444 |
| yohC | fabG9 | CH53_4075 | CH53_3905 | Inner membrane protein yohC. | Polysaccharide biosynthesis family protein. | 0.427 |
| yohC | ligB | CH53_4075 | CH53_1829 | Inner membrane protein yohC. | NAD-dependent DNA ligase adenylation domain protein; Catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. Belongs to the NAD-dependent DNA ligase family. LigB subfamily. | 0.453 |
| yohC | rsd | CH53_4075 | CH53_2103 | Inner membrane protein yohC. | Regulator of sigma D; Binds RpoD and negatively regulates RpoD-mediated transcription activation by preventing the interaction between the primary sigma factor RpoD with the catalytic core of the RNA polymerase and with promoter DNA. May be involved in replacement of the RNA polymerase sigma subunit from RpoD to RpoS during the transition from exponential growth to the stationary phase. | 0.755 |
| yohC | sdhC | CH53_4075 | CH53_3138 | Inner membrane protein yohC. | succ_dehyd_cytB: succinate dehydrogenase, cytochrome b556 subunit. | 0.459 |
| yohC | yqcC | CH53_4075 | CH53_2713 | Inner membrane protein yohC. | tRNA pseudouridine synthase C family protein. | 0.533 |
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