Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CH53_4166Bacterial Ig-like domain family protein. (306 aa)    
Predicted Functional Partners:
CH53_4163
Phage minor tail family protein.
 
     0.850
CH53_4162
phage_tail_L: phage minor tail protein L.
 
     0.806
CH53_4161
Hypothetical protein.
 
     0.802
CH53_4165
Hypothetical protein.
       0.794
CH53_4164
tape_meas_lam_C: phage tail tape measure protein, lambda family.
 
     0.744
CH53_4150
Fibronectin type III domain protein.
 
    0.731
CH53_3428
impA-related N-terminal family protein.
  
     0.693
CH53_4153
Bacteriophage lambda tail assembly I family protein.
 
     0.659
CH53_4171
Hypothetical protein.
       0.649
CH53_4169
Putative phage structural protein.
       0.646
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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