STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CH53_4171Hypothetical protein. (160 aa)    
Predicted Functional Partners:
CH53_4169
Putative phage structural protein.
  
    0.831
CH53_4167
Hypothetical protein; Bacteriophage related domain of unknown function family protein.
  
    0.800
CH53_4168
Putative gp12.
       0.797
CH53_4170
Hypothetical protein.
       0.773
CH53_4172
Hypothetical protein.
       0.773
CH53_4173
P22 coat protein; Gene 5 family.
       0.684
CH53_4174
Hypothetical protein.
       0.670
CH53_4166
Bacterial Ig-like domain family protein.
       0.649
CH53_4165
Hypothetical protein.
       0.640
CH53_4175
Hypothetical protein.
       0.493
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.