STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CH53_4175Hypothetical protein. (370 aa)    
Predicted Functional Partners:
CH53_4177
Hypothetical protein.
     
 0.829
CH53_4176
Hypothetical protein.
       0.804
CH53_4178
Hypothetical protein.
       0.804
CH53_4179
Hypothetical protein.
       0.713
pehX
exo-poly-alpha-D-galacturonosidase; Belongs to the glycosyl hydrolase 28 family.
  
   0.691
pehX_2
Glycosyl hydrolases 28 family protein; Belongs to the glycosyl hydrolase 28 family.
  
   0.681
CH53_3582
Hypothetical protein.
  
   0.681
CH53_4174
Hypothetical protein.
       0.540
CH53_4173
P22 coat protein; Gene 5 family.
       0.500
clpP
ATP-dependent Clp endopeptidase, proteolytic subunit ClpP; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.
  
  
 0.483
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.