STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CH53_4197phage_O_Nterm: phage replication protein O, N-terminal domain. (268 aa)    
Predicted Functional Partners:
CH53_4196
Hypothetical protein; dnaB-like helicase N terminal domain protein.
 
  
 0.861
CH53_4195
Hypothetical protein.
       0.753
CH53_4194
Hypothetical protein.
       0.741
CH53_4164
tape_meas_lam_C: phage tail tape measure protein, lambda family.
  
     0.696
CH53_4198
Putative gp58.
       0.655
smfA-2
Fimbria A protein.
  
     0.626
CH53_4199
Bacteriophage CII family protein.
       0.589
CH53_3703
Hypothetical protein.
  
     0.552
melB1_2
Major Facilitator Superfamily protein.
  
     0.534
fimA7_1
Fimbrial family protein.
  
     0.512
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.