Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Score
alsC_2Branched-chain amino acid transport system / permease component family protein; Belongs to the binding-protein-dependent transport system permease family. (357 aa)    
Predicted Functional Partners:
CH53_4236
Periplasmic binding domain protein.
 
  0.990
ccmA-12
ccmA: heme ABC exporter, ATP-binding protein CcmA.
 
  
 0.979
ccmA-5
Heme ABC exporter, ATP-binding protein CcmA; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
  
 0.937
rbsB_2
Periplasmic binding domain protein.
 
 0.930
rbsC_8
Branched-chain amino acid transport system / permease component family protein; Belongs to the binding-protein-dependent transport system permease family.
  
  
 
0.925
alsB
D-allose-binding periplasmic protein.
 
 
 0.825
mglA_3
ABC transporter family protein.
 
 
 0.781
alsA
D-allose import ATP-binding protein AlsA.
  
   0.749
rbsB_1
Periplasmic binding domain protein.
 
 
 0.733
araG_2
ABC transporter family protein; Part of the ABC transporter complex AraFGH involved in arabinose import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Arabinose importer (TC 3.A.1.2.2) family.
  
 
 0.730
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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