STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gnlSMP-30/Gluconolaconase/LRE-like region family protein. (283 aa)    
Predicted Functional Partners:
gntK_1
Therm_gnt_kin: carbohydrate kinase, thermoresistant glucokinase family protein.
    
 0.909
gntK_2
Therm_gnt_kin: carbohydrate kinase, thermoresistant glucokinase family protein.
    
 0.909
ghrB
Glyoxylate/hydroxypyruvate reductase B; Catalyzes the NADPH-dependent reduction of glyoxylate and hydroxypyruvate into glycolate and glycerate, respectively. Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. GhrB subfamily.
  
 
 0.908
CH53_4236
Periplasmic binding domain protein.
 
     0.853
alsC_2
Branched-chain amino acid transport system / permease component family protein; Belongs to the binding-protein-dependent transport system permease family.
 
     0.718
ccmA-12
ccmA: heme ABC exporter, ATP-binding protein CcmA.
 
 
   0.586
CH53_2239
3-beta hydroxysteroid dehydrogenase/isomerase family protein.
 
   
 0.582
dlgD
2,3-diketo-L-gulonate reductase; Catalyzes the reduction of 2,3-diketo-L-gulonate in the presence of NADH, to form 3-keto-L-gulonate.
 
     0.548
CH53_1715
2-keto-3-deoxy-galactonokinase family protein.
 
     0.450
CH53_1442
Dienelactone hydrolase family protein.
  
     0.411
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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