STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sgbH3-keto-L-gulonate-6-phosphate decarboxylase sgbH. (221 aa)    
Predicted Functional Partners:
ulaE_2
Xylose isomerase-like TIM barrel family protein.
 
 
 0.996
ulaE_1
Xylose isomerase-like TIM barrel family protein.
 
 
 0.985
lyx
L-xylulose/3-keto-L-gulonate kinase; Belongs to the FGGY kinase family.
 
 
 0.972
lyx_1
Hypothetical protein; FGGY family of carbohydrate kinase, N-terminal domain protein; Belongs to the FGGY kinase family.
 
 
 0.924
kdsD
kpsF: sugar isomerase, KpsF/GutQ family protein.
  
  
 0.706
gutQ
kpsF: sugar isomerase, KpsF/GutQ family protein.
  
  
 0.702
kpsF
SIS domain protein.
  
  
 0.701
CH53_4242
Hypothetical protein.
       0.642
nanE
Nitronate monooxygenase family protein; Converts N-acetylmannosamine-6-phosphate (ManNAc-6-P) to N- acetylglucosamine-6-phosphate (GlcNAc-6-P).
  
    0.596
araD
araD: L-ribulose-5-phosphate 4-epimerase.
 
  
 0.594
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
Server load: medium (52%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.