STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CH53_4259Cupin domain protein. (110 aa)    
Predicted Functional Partners:
kduI
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
  
  0.975
ogl
Oligogalacturonate lyase.
 
  
 0.920
kduD
kduD: 2-deoxy-D-gluconate 3-dehydrogenase.
 
   
 0.609
uxuA
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
 
     0.549
nadR
Trifunctional NAD biosynthesis/regulator protein NadR.
  
    0.457
exuT_1
Major Facilitator Superfamily protein.
 
     0.450
cobB-2
Sir2 family protein; Belongs to the sirtuin family. Class III subfamily.
  
    0.448
exuT_3
Major Facilitator Superfamily protein.
 
     0.424
nadD
Nicotinate (nicotinamide) nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).
   
    0.423
phnF
C_P_lyase_phnF: phosphonate metabolism transcriptional regulator PhnF.
  
    0.416
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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