STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ugpC_2ABC transporter family protein; Belongs to the ABC transporter superfamily. (375 aa)    
Predicted Functional Partners:
ycjO
Binding--dependent transport system inner membrane component family protein.
 
 0.997
togN
Binding--dependent transport system inner membrane component family protein.
 
 0.997
yesO
Bacterial extracellular solute-binding family protein.
 
 0.988
malG
Binding--dependent transport system inner membrane component family protein.
 
 
 0.964
ugpE
Binding--dependent transport system inner membrane component family protein; Part of the binding-protein-dependent transport system for sn-glycerol-3-phosphate; probably responsible for the translocation of the substrate across the membrane.
 
 0.952
ugpA
Binding--dependent transport system inner membrane component family protein.
 
 
 0.947
malF
Binding--dependent transport system inner membrane component family protein.
 
 
 0.927
malE
Maltose-binding periplasmic protein; Part of the ABC transporter complex MalEFGK involved in maltose/maltodextrin import. Binds maltose and higher maltodextrins. Belongs to the bacterial solute-binding protein 1 family.
 
 
 0.906
mdxE
Bacterial extracellular solute-binding family protein.
 
 
 0.777
CH53_2354
Bacterial extracellular solute-binding family protein.
  
 
 0.652
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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