STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pleD_1GGDEF: diguanylate cyclase domain protein. (335 aa)    
Predicted Functional Partners:
ycgG_2
EAL domain protein.
 
 0.949
barA_2
Sensory box protein.
 
 
 0.941
yjcC
EAL domain protein.
 
   
 0.930
ycgG_1
EAL domain protein.
 
 0.913
barA_1
HAMP domain protein.
 
 0.912
arcB
Sensory box protein.
 
 0.909
evgS
Sensor protein evgS.
 
 
 0.903
bvgS_2
His Kinase A domain protein.
 
 
 0.895
dosP
GGDEF: diguanylate cyclase domain protein.
 
 
0.891
adrA_2
GGDEF: diguanylate cyclase domain protein.
 
 
0.864
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.