STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CH53_4305EAL domain protein. (519 aa)    
Predicted Functional Partners:
yfiN
GGDEF: diguanylate cyclase domain protein.
   
 0.932
pleD_1
GGDEF: diguanylate cyclase domain protein.
 
   
 0.827
ydaM_1
Putative diguanylate cyclase YdaM.
 
   
 0.806
adrA_3
Putative diguanylate cyclase AdrA.
   
 0.806
pleD_2
GGDEF: diguanylate cyclase domain protein.
 
   
 0.804
hmsT_1
GGDEF: diguanylate cyclase domain protein.
 
     0.801
cph2_2
GGDEF: diguanylate cyclase domain protein.
 
   
 0.788
cph2_1
GGDEF: diguanylate cyclase domain protein.
 
   
 0.769
dosC
GGDEF: diguanylate cyclase domain protein.
  
     0.765
adrA_2
GGDEF: diguanylate cyclase domain protein.
 
     0.757
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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