STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CH53_4317Caudovirales tail fiber assembly family protein. (157 aa)    
Predicted Functional Partners:
CH53_4318
Hypothetical protein.
       0.780
dsbA_2
DSBA-like thioredoxin domain protein.
  
     0.680
CH53_1821
asmA family protein.
  
     0.640
uspA
Universal stress protein A.
  
     0.635
ompC2
Gram-negative porin family protein; Belongs to the Gram-negative porin family.
  
    0.617
uspA_1
Universal stress family protein.
  
     0.603
ompD
Gram-negative porin family protein.
  
    0.585
ompC
Outer membrane protein C; Belongs to the Gram-negative porin family.
  
    0.582
CH53_704
tape_meas_TP901: phage tail tape measure protein, TP901 family, core region.
 
  
 0.572
ompF
Gram-negative porin family protein.
  
    0.565
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.