STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yebZInner membrane protein YebZ. (294 aa)    
Predicted Functional Partners:
yobA
copC domain protein.
 
  
 0.962
CH53_4334
Hypothetical protein.
 
  
 0.879
CH53_2289
yqjK-like family protein.
  
     0.731
CH53_263
yejG-like family protein.
  
     0.704
yqjE
Hypothetical protein.
  
     0.663
secM
Secretion monitor family protein; Regulates secA expression by translational coupling of the secM secA operon. Translational pausing at a specific Pro residue 5 residues before the end of the protein may allow disruption of a mRNA repressor helix that normally suppresses secA translation initiation. Belongs to the SecM family.
  
     0.654
bhsA
Multiple stress resistance protein BhsA.
  
     0.636
atpI
ATP synthase I chain family protein.
  
     0.633
CH53_1321
Hypothetical protein; Opacity-associated A N-terminal motif family protein.
  
     0.624
CH53_2001
Bacterial regulatory s, tetR family protein.
  
     0.619
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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