Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
mlaAPutative phospholipid-binding lipoprotein mlaA. (254 aa)    
Predicted Functional Partners:
mlaC
Putative phospholipid-binding protein mlaC.
 
 
 
 0.961
mlaD
OM_asym_MlaD: outer membrane lipid asymmetry maintenance protein MlaD.
 
   
 0.902
ccmF
nrfE: cytochrome c-type biogenesis protein CcmF.
     
 0.786
ccmE
Cytochrome c-type biogenesis protein CcmE; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family.
 
     0.764
ccmC
Heme exporter CcmC family protein; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmC/CycZ/HelC family.
 
     0.760
ccmD
Heme exporter protein CcmD; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmD/CycX/HelD family.
     
 0.757
ccmI
cytochro_ccmI: cytochrome c-type biogenesis protein CcmI.
       0.727
dsbE
Thiol:disulfide interchange protein DsbE.
       0.727
ccmH
Cytochrome C biogenesis family protein; Possible subunit of a heme lyase.
       0.726
ompF
Gram-negative porin family protein.
   
 
 0.698
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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