Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CH53_474Hypothetical protein. (213 aa)    
Predicted Functional Partners:
CH53_475
Mce related family protein.
 
   0.988
CH53_476
ABC transporter family protein.
 
    0.964
mlaE_1
ABC transport permease subunit.
 
  
 0.952
yplA
Hypothetical protein.
  
     0.563
mlaD
OM_asym_MlaD: outer membrane lipid asymmetry maintenance protein MlaD.
  
   0.560
smvA
Major Facilitator Superfamily protein.
       0.527
CH53_2479
Thermostable hemolysin family protein.
  
     0.502
tolC_2
type_I_sec_TolC: type I secretion outer membrane, TolC family protein.
 
     0.497
ycaD_1
Major Facilitator Superfamily protein.
  
     0.486
hutG
hutG_amidohyd: N-formylglutamate deformylase.
  
     0.477
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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