STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
arbGCAT RNA binding domain protein. (281 aa)    
Predicted Functional Partners:
arbF_2
PTS-II-ABC-beta: PTS system, beta-glucoside-specific IIABC component family protein.
 
 0.950
bglF
EIIB_glc: PTS system, glucose-like IIB component domain protein.
 
 0.855
ascF
EIIB_glc: PTS system, glucose-like IIB component domain protein.
 
 0.841
arbF_1
EIIB_glc: PTS system, glucose-like IIB component domain protein.
 
   0.791
murP
Phosphotransferase system, EIIC family protein.
 
 
 0.764
scrA
PTS-II-BC-sucr: PTS system, sucrose-specific IIBC component.
 
 
   0.758
treP
PTS-IIBC-Tre: PTS system, trehalose-specific IIBC component.
 
 
 0.750
nagE
PTS-II-BC-nag: PTS system, N-acetylglucosamine-specific IIBC component.
 
 
 0.706
ascB_2
Glycosyl hydrolase 1 family protein; Belongs to the glycosyl hydrolase 1 family.
 
  
 0.706
mtlA
PTS system mannitol-specific EIICBA component.
 
  
 0.696
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.