Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ybiUphytanoyl-CoA dioxygenase family protein. (415 aa)    
Predicted Functional Partners:
mdeA
OAH_OAS_sulfhy: O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase family protein.
   
    0.637
gltD_1
gltD_gamma_fam: glutamate synthase, small subunit domain protein.
  
  
 0.519
gltD_2
gltD_gamma_fam: glutamate synthase, small subunit domain protein.
  
  
 0.519
fadH
NADH:flavin oxidoreductase / NADH oxidase family protein.
  
  
 0.519
rnfC_1
rnfC: electron transport complex, RnfABCDGE type, C subunit.
  
  
 0.519
malM
Maltose operon periplasmic family protein.
  
     0.487
cysI
Sulfite reductase (NADPH) hemoprotein, beta-component; Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L-cysteine from sulfate. Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
  
    0.487
ydaF_2
Acetyltransferase family protein.
       0.484
ypdB
Response regulator.
       0.445
ypdA
5TMR of 5TMR-LYT family protein.
       0.438
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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