Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yhjXMajor Facilitator Superfamily protein. (414 aa)    
Predicted Functional Partners:
ypdB
Response regulator.
 
   
 0.682
ypdA
5TMR of 5TMR-LYT family protein.
 
   
 0.663
dmsA1_2
narG: nitrate reductase, alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
  
 0.655
narJ
narJ: nitrate reductase molybdenum cofactor assembly chaperone.
  
  
 0.577
narH
narH: nitrate reductase, beta subunit.
  
  
 0.568
narI
narI: respiratory nitrate reductase, gamma subunit.
  
  
 0.528
manX
PTS system mannose-specific EIIAB component.
   
  
 0.402
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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