STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kpsMPolysialic acid transport protein kpsM. (258 aa)    
Predicted Functional Partners:
kpsT
ABC transporter family protein.
 
 0.999
CH53_539
Putative kpsE.
 
 
 0.986
CH53_537
Capsule polysaccharide biosynthesis family protein.
 
  
 0.932
kpsD
Polysialic acid transport protein kpsD.
 
  
 0.932
CH53_536
Capsule polysaccharide biosynthesis family protein.
 
   
 0.794
CH53_534
Capsule polysaccharide biosynthesis family protein.
 
   
 0.778
CH53_3310
ABC transporter family protein.
 
   
 0.647
CH53_1189
Acetyltransferase domain protein.
 
     0.530
CH53_2538
Glycosyltransferase family protein.
  
  
 0.514
bfrA
Glycosyl hydrolases 43 family protein.
  
  
 0.466
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.