STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CH53_537Capsule polysaccharide biosynthesis family protein. (675 aa)    
Predicted Functional Partners:
kpsD
Polysialic acid transport protein kpsD.
 
  
 0.987
CH53_536
Capsule polysaccharide biosynthesis family protein.
   
 0.979
CH53_539
Putative kpsE.
 
  
 0.979
kpsT
ABC transporter family protein.
 
  
 0.951
kpsM
Polysialic acid transport protein kpsM.
 
  
 0.929
CH53_3309
ABC-2 type transporter family protein.
  
  
 0.705
kdsD
kpsF: sugar isomerase, KpsF/GutQ family protein.
     
 0.528
CH53_534
Capsule polysaccharide biosynthesis family protein.
 
   
 0.489
gutQ
kpsF: sugar isomerase, KpsF/GutQ family protein.
 
   
 0.465
CH53_3225
Fatty acid desaturase family protein.
  
     0.431
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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