STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kpsDPolysialic acid transport protein kpsD. (558 aa)    
Predicted Functional Partners:
CH53_537
Capsule polysaccharide biosynthesis family protein.
 
  
 0.987
CH53_539
Putative kpsE.
 
  
 0.986
kpsT
ABC transporter family protein.
 
  
 0.948
kpsM
Polysialic acid transport protein kpsM.
 
  
 0.932
CH53_536
Capsule polysaccharide biosynthesis family protein.
 
   
 0.919
minD_2
4Fe-4S iron sulfur cluster binding s, NifH/frxC family protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
  
 
 0.799
CH53_2912
3-beta hydroxysteroid dehydrogenase/isomerase family protein.
  
  
 0.785
CH53_3309
ABC-2 type transporter family protein.
  
  
 0.728
lgrD
3-beta hydroxysteroid dehydrogenase/isomerase family protein.
  
   
 0.579
CH53_2538
Glycosyltransferase family protein.
  
  
 0.571
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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