STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CH53_554Antitoxin Phd YefM, type II toxin-antitoxin system family protein. (83 aa)    
Predicted Functional Partners:
relE
mRNA interferase RelE.
 
 
 
 0.985
CH53_3085
Hypothetical protein.
 
 
 
 0.760
nudK
GDP-mannose pyrophosphatase nudK.
       0.682
napC
napC_nirT: periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family protein.
       0.494
napB
Nitrate reductase cytochrome c-type subunit family protein; Electron transfer subunit of the periplasmic nitrate reductase complex NapAB; Belongs to the NapB family.
       0.444
CH53_2229
Plasmid maintenance system killer family protein.
 
   
 0.438
maeB
Malic enzyme, NAD binding domain protein.
 
     0.435
CH53_3639
HIRAN domain protein.
  
     0.401
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.