Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CH53_56Outer membrane usher family protein. (100 aa)    
Predicted Functional Partners:
sfaA_2
Fimbrial family protein.
  
 
 0.502
prcA
Proconvertase P-domain protein.
   
    0.455
focC_2
Hypothetical protein; Pili and flagellar-assembly chaperone, PapD N-terminal domain protein.
  
 
 0.418
CH53_1627
Putative p pilus assembly protein, pilin FimA.
  
 
 0.416
fimA3
Fimbrial family protein.
  
 
 0.416
CH53_55
Hypothetical protein.
       0.409
mrfB_2
Fimbrial family protein.
   
 
 0.402
mrfB_1
Fimbrial family protein.
   
 
 0.402
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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